Class StackProcessor

java.lang.Object
ij.process.StackProcessor
public class StackProcessor extends Object
This class processes stacks.

  • Field Details

  • Constructor Details

    • StackProcessor

      public StackProcessor(ImageStack stack)
      Constructs a StackProcessor from a stack.

    • StackProcessor

      public StackProcessor(ImageStack stack, ImageProcessor ip)
      Constructs a StackProcessor from a stack. 'ip' is the processor that will be used to process the slices. 'ip' can be null when using crop().

  • Method Details

    • invert

      public void invert()

    • flipHorizontal

      public void flipHorizontal()

    • flipVertical

      public void flipVertical()

    • applyTable

      public void applyTable(int[] table)

    • scale

      public void scale(double xScale, double yScale)

    • scale

      public void scale(double xScale, double yScale, double fillValue)

    • resize

      public ImageStack resize(int newWidth, int newHeight)
      Creates a new stack with dimensions 'newWidth' x 'newHeight'. To reduce memory requirements, the orginal stack is deleted as the new stack is created.

    • resize

      public ImageStack resize(int newWidth, int newHeight, boolean averageWhenDownsizing)

    • crop

      public ImageStack crop(int x, int y, int width, int height)
      Crops the stack to the specified rectangle.

    • rotateRight

      public ImageStack rotateRight()

    • rotateLeft

      public ImageStack rotateLeft()

    • copyBits

      public void copyBits(ImageProcessor src, int xloc, int yloc, int mode)

    • copyBits

      public void copyBits(ImageStack src, int xloc, int yloc, int mode)

    • filter3D

      public void filter3D(ImageStack out, float radx, float rady, float radz, int zmin, int zmax, int filter)
      3D filter using threads
      Parameters:
      out -
      radx - Radius of mean filter in x
      rady - Radius of mean filter in y
      radz - Radius of mean filter in z
      zmin -
      zmax -
      filter -

    • filter3D

      public void filter3D(ImageStack out, int nChs, int nZSlices, float radx, float rady, float radz, int cmin, int cmax, int zmin, int zmax, int tmin, int tmax, int filter)
      filter3d with added channel, frame, chs, and slices info for hyperstack
      Parameters:
      out - ImageStack output
      nZSlices - Number of slices in the hyperstack
      radx - Radius of filter in x
      rady - Radius of filter in y
      radz - Radis of filter in z
      cmin - start channel (0-based)
      cmax - end channel (0-based)
      zmin - start slice (0-based)
      zmax - end slice (0-based)
      tmin - start frame (0-based)
      tmax - end frame (0-based)
      filter -
      chs - Number of channels in the hyperstack